published
M. Zavolan, E. van Nimwegen The types and prevalence of alternative splice forms. Current Opinion in Structural Biology, 2006,16(3), 362-367.
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Erik van Nimwegen, Nicodeme Paul, Robert Sheridan and Mihaela Zavolan SPA: A Probabilistic Algorithm for Spliced Alignment. PLoS Genetics, 2006, 2(4), e24
Read moreA simple physical model predicts small exon length variations.
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T-M. Chern, E. van Nimwegen, C. Kai, et al. A simple physical model predicts small exon length variations. PLoS Genetics, 2006, 2(4), e45.
Read moreIdentification of clustered microRNAs using an ab initio prediction method.
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Sewer, A., Paul, N., Landgraf P. et al. Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics, 2005,6, 267.
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Carninci, P.; Kasukawa, T.; Katayama et al. The transcriptional landscape of the mammalian genome. Science , 2005, 309(5740), 1559-1563.
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Analysis of human immunodeficiency virus cytopathicity by using a new method for quantitating viral dynamics in cell culture.
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Speirs C., van Nimwegen E., Bolton D. et al. Analysis of human immunodeficiency virus cytopathicity by using a new method for quantitating viral dynamics in cell culture. Journal of Virology, 2005, 79(7), 4025-4032.
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Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.
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Yang E., van Nimwegen E., Zavolan M. et al. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Research, 2003, 13(8), 1863-1872.
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Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome.
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Zavolan, M.; van Nimwegen, E.; Gaasterland, T. Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome. Genome Research, 2002, 12(9), 1377-1385.
Read moreProbabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics.
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van Nimwegen E., Zavolan M., Rajewsky N., Siggia E.D. Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics. Proceedings of the National Academy of Sciences of the United States of America, 2002, 99(11), 7323-7328.
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