Publications
E. van Nimwegen Influenza escapes immunity along neutral networks. Science, 2006, 314(5807), 1884-1886.
Read more
M. Zavolan, E. van Nimwegen The types and prevalence of alternative splice forms. Current Opinion in Structural Biology, 2006,16(3), 362-367.
Read more
Erik van Nimwegen, Nicodeme Paul, Robert Sheridan and Mihaela Zavolan SPA: A Probabilistic Algorithm for Spliced Alignment. PLoS Genetics, 2006, 2(4), e24
Read moreA simple physical model predicts small exon length variations.
Posted in Publications, publishedNo Comment
T-M. Chern, E. van Nimwegen, C. Kai, et al. A simple physical model predicts small exon length variations. PLoS Genetics, 2006, 2(4), e45.
Read moreIdentification of clustered microRNAs using an ab initio prediction method.
Posted in Publications, publishedNo Comment
Sewer, A., Paul, N., Landgraf P. et al. Identification of clustered microRNAs using an ab initio prediction method. BMC Bioinformatics, 2005,6, 267.
Download pdf
Supplemental material
Carninci, P.; Kasukawa, T.; Katayama et al. The transcriptional landscape of the mammalian genome. Science , 2005, 309(5740), 1559-1563.
Download pdf
Supplemental material
Analysis of human immunodeficiency virus cytopathicity by using a new method for quantitating viral dynamics in cell culture.
Posted in Publications, publishedNo Comment
Speirs C., van Nimwegen E., Bolton D. et al. Analysis of human immunodeficiency virus cytopathicity by using a new method for quantitating viral dynamics in cell culture. Journal of Virology, 2005, 79(7), 4025-4032.
Download pdf
Supplemental material
Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes.
Posted in Publications, publishedNo Comment
Yang E., van Nimwegen E., Zavolan M. et al. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Research, 2003, 13(8), 1863-1872.
Download pdf
Supplemental material
Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome.
Posted in Publications, publishedNo Comment
Zavolan, M.; van Nimwegen, E.; Gaasterland, T. Splice variation in mouse full-length cDNAs identified by mapping to the mouse genome. Genome Research, 2002, 12(9), 1377-1385.
Read moreProbabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics.
Posted in Publications, publishedNo Comment
van Nimwegen E., Zavolan M., Rajewsky N., Siggia E.D. Probabilistic clustering of sequences: inferring new bacterial regulons by comparative genomics. Proceedings of the National Academy of Sciences of the United States of America, 2002, 99(11), 7323-7328.
Read more
